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Huttenhower, C, Flamholz AI, Landis JN, Sahi S, Myers CL, Olszewski KL, Hibbs MA, Siemers NO, Troyanskaya OG, Coller HA. 2007. Nearest Neighbor Networks: clustering expression data based on gene neighborhoods.. BMC bioinformatics. 8:250. Abstract

Huttenhower, C, Mutungu TK, Indik N, Yang W, Schroeder M, Forman JJ, Troyanskaya OG, Coller HA. 2009. Detailing regulatory networks through large scale data integration.. Bioinformatics (Oxford, England). 25(24):3267-74. Abstract

Huttenhower, C, Haley EM, Hibbs MA, Dumeaux V, Barrett DR, Coller HA, Troyanskaya OG. 2009. Exploring the human genome with functional maps.. Genome research. 19(6):1093-106. Abstract