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2009
Huttenhower, C, Hibbs MA, Myers CL, Caudy AA, Hess DC, Troyanskaya OG.  2009.  The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction.. Bioinformatics (Oxford, England). 25(18):2404-10. Abstract
Hess, DC, Myers CL, Huttenhower C, Hibbs MA, Hayes AP, Paw J, Clore JJ, Mendoza RM, Luis B S, Nislow C et al..  2009.  Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis.. PLoS genetics. 5(3):e1000407. Abstract
Hibbs, MA, Myers CL, Huttenhower C, Hess DC, Li K, Caudy AA, Troyanskaya OG.  2009.  Directing experimental biology: a case study in mitochondrial biogenesis.. PLoS computational biology. 5(3):e1000322. Abstract
Huttenhower, C, Haley EM, Hibbs MA, Dumeaux V, Barrett DR, Coller HA, Troyanskaya OG.  2009.  Exploring the human genome with functional maps.. Genome research. 19(6):1093-106. Abstract
Huttenhower, C, Myers CL, Hibbs MA, Troyanskaya OG.  2009.  Computational analysis of the yeast proteome: understanding and exploiting functional specificity in genomic data.. Methods in molecular biology (Clifton, N.J.). 548:273-93. Abstract
2007
Hibbs, MA, Hess DC, Myers CL, Huttenhower C, Li K, Troyanskaya OG.  2007.  Exploring the functional landscape of gene expression: directed search of large microarray compendia.. Bioinformatics (Oxford, England). 23(20):2692-9. Abstract
Huttenhower, C, Flamholz AI, Landis JN, Sahi S, Myers CL, Olszewski KL, Hibbs MA, Siemers NO, Troyanskaya OG, Coller HA.  2007.  Nearest Neighbor Networks: clustering expression data based on gene neighborhoods.. BMC bioinformatics. 8:250. Abstract
2006
Myers, CL, Barrett DR, Hibbs MA, Huttenhower C, Troyanskaya OG.  2006.  Finding function: evaluation methods for functional genomic data.. BMC genomics. 7:187. Abstract
Sealfon, RSG, Hibbs MA, Huttenhower C, Myers CL, Troyanskaya OG.  2006.  GOLEM: an interactive graph-based gene-ontology navigation and analysis tool.. BMC bioinformatics. 7:443. Abstract