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2010
Park, CY, Hess DC, Huttenhower C, Troyanskaya OG.  2010.  Simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway components.. PLoS computational biology. 6(11):e1001009. Abstract
2009
Huttenhower, C, Hibbs MA, Myers CL, Caudy AA, Hess DC, Troyanskaya OG.  2009.  The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction.. Bioinformatics (Oxford, England). 25(18):2404-10. Abstract
Hess, DC, Myers CL, Huttenhower C, Hibbs MA, Hayes AP, Paw J, Clore JJ, Mendoza RM, Luis BS, Nislow C et al..  2009.  Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis.. PLoS genetics. 5(3):e1000407. Abstract
Hibbs, MA, Myers CL, Huttenhower C, Hess DC, Li K, Caudy AA, Troyanskaya OG.  2009.  Directing experimental biology: a case study in mitochondrial biogenesis.. PLoS computational biology. 5(3):e1000322. Abstract
2007
Hibbs, MA, Hess DC, Myers CL, Huttenhower C, Li K, Troyanskaya OG.  2007.  Exploring the functional landscape of gene expression: directed search of large microarray compendia.. Bioinformatics (Oxford, England). 23(20):2692-9. Abstract